PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.40961s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 155aa    MW: 17309.6 Da    PI: 4.9526
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.40961s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26052.41.5e-16563158
                DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer..edam 58
                          +Ca+Ck+l+++Ca+ C++ap+fp+ +  +f+ vh++FGa nv ++l++l+  e+  + am
  Araha.40961s0001.1.p  5 RCAVCKILKETCAPRCIYAPHFPSID-TRFEDVHQVFGAVNVRNILDNLESPEQhiKSAM 63
                          6***********************98.89*******************954443125555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.9524105IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-14558IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MTSTRCAVCK ILKETCAPRC IYAPHFPSID TRFEDVHQVF GAVNVRNILD NLESPEQHIK  60
SAMNELETYV GHDQMPKFYD LPMPDDFLIT PASSDSFIEK IKSLNDVQKN QLMQLQTSAD  120
VQMIMSNIFW KKEDQKMDDG HGHGGDGAST SAGQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869811.12e-95hypothetical protein ARALYDRAFT_914342
SwissprotO496513e-70LBD32_ARATH; LOB domain-containing protein 32
TrEMBLD7ME153e-95D7ME15_ARALL; Putative uncharacterized protein
STRINGscaffold_702084.18e-95(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.19e-66LOB domain-containing protein 32